## Error in read.table(file = file, header = header, sep = sep, quote = quote, :
## object 'config' not found
Samples: dcDNA Seq
pychopper: no
mapping version: v6
LoRTIA: yes (stranded only output)
## Bootstrap (r = 0.49)... Done.
## Bootstrap (r = 0.6)... Done.
## Bootstrap (r = 0.68)... Done.
## Bootstrap (r = 0.79)... Done.
## Bootstrap (r = 0.89)... Done.
## Bootstrap (r = 1.0)... Done.
## Bootstrap (r = 1.09)... Done.
## Bootstrap (r = 1.19)... Done.
## Bootstrap (r = 1.3)... Done.
## Bootstrap (r = 1.38)... Done.
The sample 48h_3 stands out!
## Bootstrap (r = 0.5)... Done.
## Bootstrap (r = 0.58)... Done.
## Bootstrap (r = 0.69)... Done.
## Bootstrap (r = 0.77)... Done.
## Bootstrap (r = 0.88)... Done.
## Bootstrap (r = 1.0)... Done.
## Bootstrap (r = 1.08)... Done.
## Bootstrap (r = 1.19)... Done.
## Bootstrap (r = 1.27)... Done.
## Bootstrap (r = 1.38)... Done.
## [1] "ORF10, ORF11" "ORF27, ORF26, ORF25"
## [3] "ORF37, ORF36, ORF35, ORF35.5" "ORF41, ORF42, OF43"
## [5] "ORF64_1" "ORF24"
## [1] 6
## [1] "ORF10, ORF11" "ORF27, ORF26, ORF25"
## [3] "ORF37, ORF36, ORF35, ORF35.5" "ORF41, ORF42, OF43"
## [5] "ORF24" "ORF64_1"
## [1] 6
## [1] "ORF10, ORF11" "ORF27, ORF26, ORF25"
## [3] "ORF37, ORF36, ORF35, ORF35.5" "ORF41, ORF42, OF43"
## [5] "ORF24" "ORF64_1"
## [1] 6
## [1] "ORF10, ORF11" "ORF27, ORF26, ORF25"
## [3] "ORF37, ORF36, ORF35, ORF35.5" "ORF41, ORF42, OF43"
## [5] "ORF24" "ORF64_1"
## [1] 6
## The following genes were removed from their corresponding clusters
## as their silhouette widths were lower than 0.1 and their distance from the group centroid was higher than 0.5:
## ORF10, ORF11
## ORF27, ORF26, ORF25
## ORF37, ORF36, ORF35, ORF35.5
## ORF41, ORF42, OF43
## ORF24
## ORF64_1